Graphics
Background Color
Choose a color for the background of the plot.
X Grid Lines
Enable this option to show grids for the X-axis. Grid lines will appear for each major tic on the axis.
Y Grid Lines
Enable this option to show grids for the Y-axis. Grid lines will appear for each major tic on the axis.
Grid Line Width
Enter a value for the width of the grid lines. The default, 0, creates the narrowest possible line that the screen (or printer) can draw.
Grid Line Style
Choose a line style for grid lines.
Grid Color
Choose a color for grid lines.
Grids On Top
Enable this option to draw grids on top of the other graphics in the plot. When the option is unchecked, grids are drawn behind the other graphics.
Margin
Margin as a percentage of the size.
Legend
Enable this option to show the legend on the plot.
Initial Scaling Size
Set the initial axis scaling for the Cen-se plot. This is recomputed as the plot is rebuilt.
Labels
Show or hide labels.
Label Font
Choose a font for the labels.
Measurements and Cell Types
Measurements
Displays a dialog to select which measurements to include on the Cen-se.
Cell Types
Displays a dialog to select which cell types to include on the Cen-se.
Rebuild Measurements List
Rebuilds the list of measurements.
Rebuild Cell Type List
Rebuilds the list of cell types.
Cen-se Options
Maximum Events
Maximum number of events to allow in the Cen-se when not in Template mode.
Percent Neighborhood Size
Relative size of the neighborhood used for each event, as a percentage of Maximum Events.
Neighborhood Size
Computed size of the neighborhood.
Density Normalization
Creates better-resolved plots. When unchecked, additional structure is shown within populations.
Cen-se Results
Info Loss
A measure of information loss from dimensionality reduction. The unit is nats.
%Information Lost
Information loss expressed as a percentage.
P Q R-Squared
Quantifies the degree of correlation between Q and P nearest neighbor matrices.
Total Time
Total time to build the Cen-se plot.
Interpolation Time
Interpolation time for Template mode.
Clustering Index
Index based on the Dunn index. Higher values indicate better clustering.
Beta Clustering Index
Index based on the SSMD beta index. Lower values indicate better clustering.